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pycea-lineage - Home pycea-lineage - Home
  • Getting started with Pycea
  • Plotting trees
  • Growth dynamics
  • API
    • pycea.pp.add_depth
    • pycea.tl.ancestral_states
    • pycea.tl.autocorr
    • pycea.tl.clades
    • pycea.tl.compare_distance
    • pycea.tl.distance
    • pycea.tl.neighbor_distance
    • pycea.tl.sort
    • pycea.tl.tree_distance
    • pycea.tl.tree_neighbors
    • pycea.tl.n_extant
    • pycea.tl.fitness
    • pycea.tl.partition_test
    • pycea.tl.expansion_test
    • pycea.pl.tree
    • pycea.pl.branches
    • pycea.pl.nodes
    • pycea.pl.annotation
    • pycea.pl.n_extant
    • pycea.get.leaves
    • pycea.get.root
    • pycea.get.node_df
    • pycea.get.edge_df
    • pycea.get.palette
    • pycea.datasets.packer19
    • pycea.datasets.yang22
    • pycea.datasets.koblan25
  • Changelog
  • Contributing guide
  • References

Index

A | B | C | D | E | F | K | L | M | N | P | R | S | T | Y

A

  • add_depth() (in module pycea.pp)
  • ancestral_states() (in module pycea.tl)
  • annotation() (in module pycea.pl)
  • autocorr() (in module pycea.tl)

B

  • branches() (in module pycea.pl)

C

  • clades() (in module pycea.tl)
  • compare_distance() (in module pycea.tl)

D

  • distance() (in module pycea.tl)

E

  • edge_df() (in module pycea.get)
  • expansion_test() (in module pycea.tl)

F

  • fitness() (in module pycea.tl)

K

  • koblan25() (in module pycea.datasets)

L

  • leaves() (in module pycea.get)

M

  • module
    • pycea.datasets
    • pycea.get
    • pycea.pl
    • pycea.pp
    • pycea.tl

N

  • n_extant() (in module pycea.pl)
    • (in module pycea.tl)
  • neighbor_distance() (in module pycea.tl)
  • node_df() (in module pycea.get)
  • nodes() (in module pycea.pl)

P

  • packer19() (in module pycea.datasets)
  • palette() (in module pycea.get)
  • partition_test() (in module pycea.tl)
  • pycea.datasets
    • module
  • pycea.get
    • module
  • pycea.pl
    • module
  • pycea.pp
    • module
  • pycea.tl
    • module

R

  • root() (in module pycea.get)

S

  • sort() (in module pycea.tl)

T

  • tree() (in module pycea.pl)
  • tree_distance() (in module pycea.tl)
  • tree_neighbors() (in module pycea.tl)

Y

  • yang22() (in module pycea.datasets)

By William Colgan

© Copyright 2026, William Colgan..